Zishan Shu

About Me

I am currently a PhD student👩🏻‍🎓 in Computer Science and Technology💻 at Peking University👩🏻‍💻. My research interests focus on AI for Science, particularly in areas such as protein structure prediction🧪, molecular dynamics🧬, and Cryo-EM algorithms🔬.

• Phone: (+86)156-0023-9851
• Email: zishanshu0602@163.com

Education

• PhD in Computer Science and Technology, Peking University (2024.09 – 2029.07)
  • Research Interests: AI for Science, Artificial Intelligence, Protein Structure Prediction, Molecular Dynamics, Cryo-EM Algorithms
• Bachelor in Statistics, Minzu University of China (2020.09 – 2024.07)
  • Core Courses: Applied Regression Analysis, Statistical Case Studies, Complex Variables, Operations Research, Python and Data Analysis, Object-Oriented Programming

Research & Projects

Cryo-EM Electron Density Map Guided High-Precision Atomic Model Reconstruction

• Utilized the EMDB Cryo-EM dataset and corresponding PDB protein structures, applied Diffusion for Cryo-EM re-atom segmentation, and aligned the 3D structure using the Viterbi algorithm and Hidden Markov Process.

Complex Dynamics Equilibrium Distributions Prediction

• Used MD dataset (MDVerse) and DIG module, combined with RoseTTAFold for protein dynamics conformational distribution prediction.